PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma42g00920.1
Common NameZOSMA_42G00920
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 310aa    MW: 36283.6 Da    PI: 4.8533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma42g00920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++  G g+W+ ++ +  + R++k+c++rw +yl
  Zosma42g00920.1 14 RGLWSPEEDEKLVRYITNNGYGCWSEVPDKADLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding55.31.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE++l++++++  G++ W+ Ia++++ gRt++++k++w+++
  Zosma42g00920.1  67 RGRFSSEEEKLIINLHQIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23664IPR009057Homeodomain-like
PROSITE profilePS5129415.766961IPR017930Myb domain
SuperFamilySSF466892.43E-2811108IPR009057Homeodomain-like
SMARTSM007172.5E-91363IPR001005SANT/Myb domain
PfamPF002495.5E-131461IPR001005SANT/Myb domain
CDDcd001675.45E-81761No hitNo description
PROSITE profilePS5129424.57962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2565117IPR009057Homeodomain-like
SMARTSM007179.8E-1766114IPR001005SANT/Myb domain
PfamPF002498.1E-1667111IPR001005SANT/Myb domain
CDDcd001672.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVQHSCCNQQ KVKRGLWSPE EDEKLVRYIT NNGYGCWSEV PDKADLQRCG KSCRLRWINY  60
LRPDIRRGRF SSEEEKLIIN LHQIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLIRKP  120
TLPTTSNNNN NCPFPIRRTC NIPELLPAPP PPPHSSSNFA AAAPFMFDTS NLDNDYDNRF  180
TTVSYAREEI PSTLVVGSDE INETWYLNDQ IDPMMLSSFQ SCDEKYYFDS CNDTMLLPPS  240
FMDSNMEYSL DTNEFQWVNE PQQQYYSSSL MLWENQWPEH HDYLMDDEMI MSSSNISSNY  300
LPKMDFSYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189470.11e-80myb-related protein Myb4
RefseqXP_025637162.11e-80transcription factor MYB4
TrEMBLA0A0K9P2390.0A0A0K9P239_ZOSMR; Uncharacterized protein
STRINGEOY248412e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.19e-77myb domain protein 103