PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma42g00960.1
Common NameZOSMA_42G00960
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 250aa    MW: 26992.2 Da    PI: 9.1487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma42g00960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19124174255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+  ++g
  Zosma42g00960.1 124 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFGMRG 174
                      8********.***********9987..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.79E-33123182No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32123183IPR001471AP2/ERF domain
SMARTSM003805.5E-39124188IPR001471AP2/ERF domain
PfamPF008476.3E-13124174IPR001471AP2/ERF domain
PROSITE profilePS5103223.802124182IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-23124183IPR016177DNA-binding domain
PRINTSPR003674.7E-11125136IPR001471AP2/ERF domain
PRINTSPR003674.7E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSNSTMTDFA LLEKISQHLL DESLPSTFES LYPCISDDWG ELPLQVNDSD DMLVYGILHD  60
ACNAGWVPSL SDPNSSPSLS VSDPVVFKSE PVIVKSEPKV LVSEPVKFQV KVSTTTPSPP  120
KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTFETAED AALAYDRAAF GMRGSKALLN  180
FPLHIRSNIE ANSKASSKKT SRSTSRKRTS PDSSSTLSNS TPTTSSASST SSSSCVTSGS  240
EQSKRRKTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-40121187268ATERF1
3gcc_A6e-40121187268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201470.14e-72LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2-like
SwissprotO803372e-64EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0K9P4A10.0A0A0K9P4A1_ZOSMR; Ethylene-responsive transcription factor 1A
STRINGGLYMA01G41520.12e-68(Glycine max)
STRINGA0A087G2E18e-69(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-51ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]