PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma42g00970.1
Common NameZOSMA_42G00970
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 232aa    MW: 25750.9 Da    PI: 9.7125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma42g00970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.3e-2074124255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp++ g   r++lg+++ta +Aa+a++ a+ k++g
  Zosma42g00970.1  74 KYRGVRQRP-WGKFAAEIRDPKKKG--SRVWLGTYDTAIDAARAYDVAAFKMRG 124
                      8********.**********96643..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-3373133IPR001471AP2/ERF domain
CDDcd000182.98E-3274133No hitNo description
PROSITE profilePS5103224.52674132IPR001471AP2/ERF domain
SMARTSM003802.9E-4074138IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2374133IPR016177DNA-binding domain
PfamPF008475.7E-1474124IPR001471AP2/ERF domain
PRINTSPR003676.7E-147586IPR001471AP2/ERF domain
PRINTSPR003676.7E-14114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDYTGSNLNG DTFSTIDYIR NHLLGDVSVT DLLNYPKQNN STNGTGATGG DNSGFLRKRK  60
LSIEVSMSVM PERKYRGVRQ RPWGKFAAEI RDPKKKGSRV WLGTYDTAID AARAYDVAAF  120
KMRGSKAILN FPNEITDNCE SSTITSRNLP EKKTMAVSKK KSKEEEEDGT MKKRRVVSEE  180
DFGAPLTPSS WTGFWEDDEQ GNGLFVVPPL SPSTSSPRTN NPLGFRQMVF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2873132160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2873135466ATERF1
3gcc_A2e-2873135466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560LRKRKL
2158174KKKSKEEEEDGTMKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022034941.15e-52ethylene-responsive transcription factor 5-like
TrEMBLA0A0K9P2441e-170A0A0K9P244_ZOSMR; Uncharacterized protein
STRINGVIT_16s0013g01120.t012e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-31ERF family protein