PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma431g00070.1
Common NameZOSMA_431G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 380aa    MW: 43060.7 Da    PI: 5.7769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma431g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34151062102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++led+++++++ ws + +sf+v ++ +fak++LpkyFkh+nfaSFvRQLn+YgF+kv+  +         weF++++F +gk++ll
  Zosma431g00070.1  15 FLTKTYDMLEDPSTNSIVAWSYSAKSFIVRNHVDFAKDLLPKYFKHNNFASFVRQLNTYGFRKVDPGQ---------WEFANDEFVRGKRHLL 98 
                       9********************999****************************************9987.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r++ 
  Zosma431g00070.1  99 KNIHRRRP 106
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.62E-3210104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MMDGSVGGSN SPAPFLTKTY DMLEDPSTNS IVAWSYSAKS FIVRNHVDFA KDLLPKYFKH  60
NNFASFVRQL NTYGFRKVDP GQWEFANDEF VRGKRHLLKN IHRRRPTHSH SLQHGALTNA  120
EKLDLQDEIE KLKRDKAMLF SDLQQDLQKR REIEKQIESL ERRLKIMKRN EQNMMTMLEQ  180
IMERSTESSF FSSIVMRQNQ GKKRTLSKTD LFCQDFVGMD EDNKMILAVH PSNDIAASAV  240
PMLEIEPFDK MESTLYSLEK LIRSASQASG EVFANGITVT DPELCIDVNT HPCSPSSLVD  300
SMEIVETANQ VEITPSHHSI HTQTQMQSNI SEIDVNSEPP FLPPPPAAAS EVSSSRDIGV  360
SESVLRAGEN DIFWQQCLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26410419129Heat shock factor protein 1
5d5v_B3e-26410419129Heat shock factor protein 1
5d5v_D3e-26410419129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916598.11e-108heat stress transcription factor A-4b
TrEMBLA0A0K9P4260.0A0A0K9P426_ZOSMR; Heat shock transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-62HSF family protein