PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma43g00930.1

Common Name

ZOSMA_43G00930

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

ERF

Protein Properties

Length: 197aa MW: 22448.7 Da PI: 8.8396

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma43g00930.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.4	1.7e-18	51	100	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+++AeIrd + ng +r++lg+f+tae+Aa a+++a+ ++g Zosma43g00930.1 51 YRGIRRRP-WGKFAAEIRDSTRNG--ARVWLGTFDTAEKAAIAYDQAAFVMRG 100 9*****.******44465..*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.972	50	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-23	50	110	IPR016177	DNA-binding domain
SMART	SM00380	1.9E-36	50	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-30	50	109	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	51	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.6E-11	51	62	IPR001471	AP2/ERF domain
CDD	cd00018	5.59E-28	51	109	No hit	No description
PRINTS	PR00367	7.6E-11	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MESLPFDQSS AEEMILWDML ITADEVKPQG GDGRRDDDGL RKEEEKVSKE YRGIRRRPWG 60 KFAAEIRDST RNGARVWLGT FDTAEKAAIA YDQAAFVMRG KTAILNFPVE VVKESLRSMD 120 YGKATEQAAK TMMSPAMMLK RQNSLKRKSD MSKKRKDNKK VAVKADERRF DLVELEDLGV 180 DLLEEILRIS EFSTLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-29	48	111	3	66	ATERF1
3gcc_A	2e-29	48	111	3	66	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020420951.1	2e-57	ethylene-responsive transcription factor 1B
Refseq	XP_021811101.1	3e-58	ethylene-responsive transcription factor 1B-like
TrEMBL	A0A0K9P3U3	1e-139	A0A0K9P3U3_ZOSMR; Ethylene-responsive transcription factor 1B
STRING	EMJ07486	5e-58	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP277	37	249

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	4e-41	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Zosma43g00930.1