PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma43g00940.1
Common NameZOSMA_43G00940
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 128aa    MW: 14103.8 Da    PI: 8.3104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma43g00940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-171869155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +g+++AeIrd       r   r +lg+f ta+eAa+a+++a+  l+g
  Zosma43g00940.1 18 TRYRGVRKRP-WGKYAAEIRDsT-----RlgGRLWLGTFSTAKEAARAYDRAAYGLRG 69
                     68********.**********33.....2448*********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-151876No hitNo description
PfamPF008476.0E-111869IPR001471AP2/ERF domain
PROSITE profilePS5103222.3261977IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-211978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-281977IPR001471AP2/ERF domain
SMARTSM003802.5E-311983IPR001471AP2/ERF domain
PRINTSPR003671.3E-102031IPR001471AP2/ERF domain
PRINTSPR003671.3E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEGRGCNCSC RGGGKKETRY RGVRKRPWGK YAAEIRDSTR LGGRLWLGTF STAKEAARAY  60
DRAAYGLRGA SAILNFSIDD EDARLEDGHT SPSSSSRSDV ECRKDVIVLE VLDDKVLDDL  120
LKLPYDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-271176671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292207.18e-35PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_020222019.16e-35ethylene-responsive transcription factor ERF098
SwissprotQ9LTC58e-32ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9P1P64e-86A0A0K9P1P6_ZOSMR; Uncharacterized protein
STRINGXP_004292207.13e-34(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-19ethylene response factor 1
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]