PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00160.1
Common NameZOSMA_44G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 224aa    MW: 25316.5 Da    PI: 8.7743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-164590147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W + Ed +l+ +v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  Zosma44g00160.1 45 KGHWKEAEDAKLKFLVAQHGPQNWSLIAEQLE-GRSGKSCRLRWYNQ 90
                     789*****************************.************96 PP
2Myb_DNA-binding537.6e-1798141247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++eE+e+l+ a + +G++ W+ Ia+ ++ gRt++ +k++w+  
  Zosma44g00160.1  98 SSFSAEEEERLISARAIHGNK-WAMIAKLIP-GRTDNAVKNHWHVM 141
                      689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4324091IPR017930Myb domain
SMARTSM007174.6E-134493IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2745138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-264698IPR009057Homeodomain-like
PfamPF139217.7E-1648108No hitNo description
CDDcd001672.63E-124889No hitNo description
PROSITE profilePS5129423.61192146IPR017930Myb domain
SMARTSM007172.0E-1496144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2099143IPR009057Homeodomain-like
CDDcd001671.68E-1199142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEFDQTTVTS ELAYQLTPPP LLLGRLPTSS RVMDVEEQSS RVGTKGHWKE AEDAKLKFLV  60
AQHGPQNWSL IAEQLEGRSG KSCRLRWYNQ LDPRINKSSF SAEEEERLIS ARAIHGNKWA  120
MIAKLIPGRT DNAVKNHWHV MKARNRREKQ ANNAYTSYIT RPSFPLSFYH HPSFYRGYGE  180
NKYAGVDPLS EAPSCCSSSS EHSDVDTKIL NVPFFDFLGV GNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31441396101B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597681.11e-56transcription factor MYB56-like
RefseqXP_020698982.16e-57transcription factor CSA-like
TrEMBLA0A0K9P3291e-168A0A0K9P329_ZOSMR; Uncharacterized protein
STRINGcassava4.1_028014m8e-55(Manihot esculenta)
STRINGcassava4.1_029396m6e-55(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-54myb domain protein 105