PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00200.1
Common NameZOSMA_44G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 347aa    MW: 38232.8 Da    PI: 7.9935
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.79.7e-1487147257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+++eq+  Le+ F++   +p ++e  ++ k l     + + +V++WFqNrR + ++
  Zosma44g00200.1  87 RSRWTPKPEQILLLESIFNSgMVNPPKDETVRIRKLLekfgPVGDVNVFYWFQNRRSRSRR 147
                      89*****************99****************99999****************997 PP
2Wus_type_Homeobox101.94.6e-3386149265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi +Le++++sG+++P+k+e+ ri++ Le++G ++d NVfyWFQNr++R+r++q
    Zosma44g00200.1  86 VRSRWTPKPEQILLLESIFNSGMVNPPKDETVRIRKLLEKFGPVGDVNVFYWFQNRRSRSRRRQ 149
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1383155IPR009057Homeodomain-like
PROSITE profilePS5007110.91683148IPR001356Homeobox domain
SMARTSM003894.3E-685152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-887152IPR009057Homeodomain-like
PfamPF000461.9E-1187147IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNYVFSFRLY NSIDRLQYLS SHSSCLPTHV TPVTSISTSL SLPAFLISHV SSLILIFLFC  60
EFDEIIKIDR LIMGDKTQKI VSTEPVRSRW TPKPEQILLL ESIFNSGMVN PPKDETVRIR  120
KLLEKFGPVG DVNVFYWFQN RRSRSRRRQK QMQAGMGMRM SAGASVDNRP YGVILGDSIH  180
MAIQTTTSSS SSNSSGTRCG FLPSSSANSL VGDDTADDLF TISRQMGFPG VEEAPAMMIP  240
TSSTSSTGDG LHCQSTASLI TVFINGVLTE VPGGRIDMRK MFGNDMILVH SSGEIVPSTE  300
YGVLLQGLQI GESYFLIIQA ESGLPSNQNQ FMIHAGLKTQ FMKRDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781305.12e-69WUSCHEL-related homeobox 6-like
SwissprotQ6Z3L49e-52WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBLA0A0K9P0R20.0A0A0K9P0R2_ZOSMR; WUSCHEL-related homeobox
STRINGXP_008781307.18e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-33WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]