PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00600.1
Common NameZOSMA_44G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 224aa    MW: 25103 Da    PI: 5.1637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.8e-3053111259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC++a gC++kk++er+++d ++++itY + Hnh+
  Zosma44g00600.1  53 SDMWSWRKYGQKPIKGSPYPRGYYRCSTAkGCSAKKQIERCRTDASLIIITYISAHNHP 111
                      69************************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-3045113IPR003657WRKY domain
SuperFamilySSF1182902.62E-2551113IPR003657WRKY domain
SMARTSM007741.2E-3452112IPR003657WRKY domain
PROSITE profilePS5081130.05653113IPR003657WRKY domain
PfamPF031061.7E-2454111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDCSPCSKPE LVAQQLPLEN SISKRRKIVQ KKVITMKVEE NSGRQQRGDG PPSDMWSWRK  60
YGQKPIKGSP YPRGYYRCST AKGCSAKKQI ERCRTDASLI IITYISAHNH PGPKFLRHHD  120
NDDGGNEEDE TPESNTSQSD MGSSCSIDLQ QPVLEESNQL IGIQIEEKTH EDHPPLPTTT  180
ATTQLSLEEN DFFDELEELP IITSSFTSLL TTSLFDDRIH LPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-21541131879Disease resistance protein RRS1
5w3x_D3e-21541131879Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267989.15e-61PREDICTED: probable WRKY transcription factor 69
TrEMBLA0A0K9P3751e-165A0A0K9P375_ZOSMR; Uncharacterized protein
STRINGXP_010267989.12e-60(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-37WRKY DNA-binding protein 65