PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00700.1
Common NameZOSMA_44G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CAMTA
Protein Properties Length: 918aa    MW: 105683 Da    PI: 6.458
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1156.45.7e-49321463117
             CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      + +krwl+++e++a+L n++ ++++ ++ + p+sgsl+L++rk++r+frkDG++wkkkkdgktv+E+hekLK+g+ e++++yYa+ e++p f r
  Zosma44g00700.1  32 DASKRWLRPNEVYAVLSNHKLWDIQPQPVNLPSSGSLLLFDRKMLRNFRKDGHNWKKKKDGKTVQEAHEKLKMGNEEMIHVYYARNEDDPYFYR 125
                      4499****************************************************************************************** PP

             CG-1  97 rcywlLeeelekivlvhylev 117
                      rcywlL++++e+ivlvhy+++
  Zosma44g00700.1 126 RCYWLLDRNFERIVLVHYRQT 146
                      ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.32726152IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-5929147IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-4333145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.84E-7358446IPR014756Immunoglobulin E-set
SuperFamilySSF484034.04E-14544665IPR020683Ankyrin repeat-containing domain
CDDcd002047.93E-11551659No hitNo description
PfamPF127962.7E-6552628IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.7E-13558665IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.743567663IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.354600632IPR002110Ankyrin repeat
SMARTSM002482.1E-5600629IPR002110Ankyrin repeat
PROSITE profilePS500966.504754780IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.01E-6756820IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.79769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041770799IPR000048IQ motif, EF-hand binding site
PfamPF006120.011772790IPR000048IQ motif, EF-hand binding site
SMARTSM000150.33792814IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682793817IPR000048IQ motif, EF-hand binding site
PfamPF006120.2795814IPR000048IQ motif, EF-hand binding site
SMARTSM000155.3872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.517874902IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MDSLGLVEPL CAKEIHGFNT TADLNIQRLM NDASKRWLRP NEVYAVLSNH KLWDIQPQPV  60
NLPSSGSLLL FDRKMLRNFR KDGHNWKKKK DGKTVQEAHE KLKMGNEEMI HVYYARNEDD  120
PYFYRRCYWL LDRNFERIVL VHYRQTSEEG TIQPSSIPIK PKETFHSSPV VSSNASNHID  180
LPNCLFEEIN SDGDKLSDTG FHTSQSECEN HNTNLDEDDG LYWKELMDST FDLCAQENEI  240
TIPSEKQVAY QPNILENHPN SDHLQMKDHQ KIDPQFHIRP TDGSVESQMA YLDGNMIENT  300
FNDNILMTQD SLEKWDYVVE NAKELLDGSQ LQNQDPNNHM PTDFPPTFHF SYEEQVFTIV  360
DISPSYTYCM EEETKIILVG YFHDSHKHLV SSNVFCVIGD RCVPACPLQV GVYRITASIH  420
LPSSVDLFLT LDGHTRISQI ISFEYRSLAN PPFDSKEKNP KDCTDDIRDD KILLRLVHLL  480
FTTTNNYSVL SNKLSLSSMR DVKKFNSATT SFLENQWKRF FNSNEDVGII SSIINRDFFE  540
LILKNKLQEW ILLRMAEGCR FPSHDQQGQG IIHLCAMLDY TWAIRLFSLS SLSLDFRDKH  600
GWTPLHWATY YGREKTVVTL LSAGANPSLV ADPTPNFPGG CTSADLASQE GYEGLGAYLA  660
EQGLRAHFHA MTLSGNASSS QLPYSTDLTG IENTNPENLS EQELCLKDSL AAYRNAADAA  720
DRIQAAFRER SLKHQIKIAQ SKSESESEAS SIVAAMKIQK AFKNHNRRKM MKAAVTIQGT  780
FRTWQTRKNF LNMRRQVVRI QAAFRGLRER KQYQKICWSV GVLEKALFRW RRKRKGLRGL  840
QAESVTDTQP MEEENCIEEE FFRISREQAE DRVQRSVVRV QAMFRSYRTQ QEYRRIKLAY  900
NQANLECDEF GDPSNNM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938301.10.0calmodulin-binding transcription activator CBT isoform X2
TrEMBLA0A0K9P3840.0A0A0K9P384_ZOSMR; Calmodulin-binding transcription activator
STRINGXP_008786234.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators