PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00820.1
Common NameZOSMA_44G00820
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 157aa    MW: 17134.4 Da    PI: 8.9693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-193064135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+t+kTplWR gp+g+k+LCnaCG++yrkk++
  Zosma44g00820.1 30 CADCRTSKTPLWRGGPSGPKSLCNACGIRYRKKRR 64
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.23E-132463No hitNo description
PROSITE profilePS5011412.5852460IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-162482IPR000679Zinc finger, GATA-type
CDDcd002028.52E-152979No hitNo description
Gene3DG3DSA:3.30.50.102.7E-162964IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PfamPF003201.5E-173064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDSIEEKEPG EPITIGDHQV GDSQEATLIC ADCRTSKTPL WRGGPSGPKS LCNACGIRYR  60
KKRRELLRLN DGVQKESKKD KKTFSDDSGG GDGGGKMSVL STLGFGPELW LKQRSLQQLR  120
RRRRLGEEEE AAVLLMALSS GLIYSSMQSE RPTPPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LRRRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797400.15e-40GATA transcription factor 15-like
SwissprotQ9FJ105e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0K9P3901e-108A0A0K9P390_ZOSMR; GATA transcription factor 16
STRINGXP_008797400.12e-39(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.17e-14GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]