PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma44g01450.1

Common Name

ZOSMA_44G01450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 113aa MW: 12500.5 Da PI: 8.7284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma44g01450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	17	38	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 +kCp C k ++rk++L+ H + Zosma44g01450.1 17 HKCPACFKQYKRKEHLVEHVKH 38 79*****************986 PP
2	zf-C2H2	13.8	0.00018	47	64	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 kCp C+k++++ ++L+ H Zosma44g01450.1 47 KCPVCKKHCKSLESLREH 64 7***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.616	17	46	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-5	17	38	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	19	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MTEVESSDLS KLTSVRHKCP ACFKQYKRKE HLVEHVKHSN HSIHQPKCPV CKKHCKSLES 60 LREHAIGSLS KGCCAKAFID KGCSLCLDIF DTSYARNAHE KLCGLSPAHP VS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018847434.1	2e-37	PREDICTED: apoptosis-enhancing nuclease
TrEMBL	A0A0K9P3E4	8e-75	A0A0K9P3E4_ZOSMR; Uncharacterized protein
STRING	XP_010278721.1	7e-35	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2146	5	5

Link Out ? help Back to Top
Phytozome	Zosma44g01450.1