PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma45g00810.1
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 537aa    MW: 60743.6 Da    PI: 5.8626
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma45g00810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.42.3e-13129221390
             FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++A+ +GFsvr  ++k+     + ++  +++ + Cs++g+++     t+ +rr++ ++r+gC a++k k+ +  ++w+ +++  +HnH+++
  Zosma45g00810.1 129 YYDFASAMGFSVRLGSTKNVvdkgSGQKILVMKMLLCSEQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRIDrFDNWVTDTVIFDHNHSFT 221
                      999***********99988877555666788999***********999999**********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-10129221IPR004330FAR1 DNA binding domain
PfamPF105511.9E-6343395IPR018289MULE transposase domain
PfamPF139631.1E-18385459IPR029480Transposase-associated domain
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MADFCHLKTA IQGLISCSAN VNPSACSDNV STPLDDDVVC STFFYSEFVK STSDDITQSS  60
AEILPTSAIL GCGTDRTPDN YCKRKYSSPA HDHSSPDHRN ASSSFSQCNK PCPVVGQVFP  120
SYELVVQSYY DFASAMGFSV RLGSTKNVVD KGSGQKILVM KMLLCSEQGS PSLILPPTNG  180
NRRKNGVSRC GCLASIKFKR IDRFDNWVTD TVIFDHNHSF TSPSKIRYLP INMSISHTSK  240
LLFSSLAEVN VPISQQAAYF SNQLGGVQNM GCMKMDINNM VRDDCIDLKN YDVDLIVEKF  300
EMNKSENEQF FYDLVKDDEG RLKRLFWADP TMIENYKLFG DSVTFDTIYK TNVYSMVFGM  360
FCGVNHHRKT TIFGGAFVRM SNEDRSWMYQ RLLSNTTINP KFVDGVDEFL NFVGTNEEYI  420
RCPCIRCAGA RYYKRNDIRL HLYRFGFQRD YVVWHQHGEI TESLSTDMEA DAFMESGSSS  480
HVDPMVDMVF ETVGHNEHSP EISNTEAQNL YKLLQEAEQF IWNGCEVTIY CFNLVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P2U90.0A0A0K9P2U9_ZOSMR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-33FAR1-related sequence 5