PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma477g00060.1

Common Name

ZOSMA_477G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YA

Protein Properties

Length: 233aa MW: 25483.8 Da PI: 8.9928

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma477g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106	3.2e-33	87	143	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R RgsgGrF Zosma477g00060.1 87 DEPIYVNAKQYNAILRRRQVRAKLEAQQKL-IKGRKPYLHESRHLHAMKRVRGSGGRF 143 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-37	85	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.407	86	146	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.2E-28	88	143	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	89	111	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	91	111	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-23	120	143	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGAGHADSEG KRVIDGHHHQ GNSEILYPTQ KFDYSQSITC FPYPYADPYL GGLVTAYGPP 60 TIMHPQMMGN VAAHSTRVPL PTEVTEDEPI YVNAKQYNAI LRRRQVRAKL EAQQKLIKGR 120 KPYLHESRHL HAMKRVRGSG GRFLNTKQLQ QSASSAAPSE ISKLSHPAML QLGGGWSVSE 180 ADALQSENGN AIASSLSSSE VTSISNCGDM MQMADVVRFS DLRPPVMSDH RL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	87	148	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261977.1	6e-67	PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBL	A0A0K9P225	1e-173	A0A0K9P225_ZOSMR; Nuclear transcription factor Y subunit A-3
STRING	XP_010261975.1	7e-65	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	9e-43	nuclear factor Y, subunit A8

Link Out ? help Back to Top
Phytozome	Zosma477g00060.1