PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma47g00090.1
Common NameZOSMA_47G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 210aa    MW: 23889.2 Da    PI: 5.3418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma47g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-1291138355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + hn+ Er RR riN+++  L++l+P +      K +Ka++L   +eY+k+Lq
  Zosma47g00090.1  91 QVHNQKERERRGRINKKMKALQDLIPGC-----HKKDKASMLDDMTEYVKYLQ 138
                      57*************************9.....699****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0488137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1091138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1692157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1692146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-1293142No hitNo description
SMARTSM003534.7E-1294143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDYTGDVGGS NMAGLFIGED EMVSWLNYDP AAAESSTRTD FINTQPPVLV AEVEAIRPDI  60
ITHTRNRTSY LWFDDGYDNR RTIKSKLKAA QVHNQKERER RGRINKKMKA LQDLIPGCHK  120
KDKASMLDDM TEYVKYLQFL VKTMTMVEGW PVPLMMYNNE QLLVPPIEEA FSNKVDIMAG  180
ATAFMPQIAP DKMLDGQQNW QSDYSGHFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P1Z21e-157A0A0K9P1Z2_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-21phytochrome interacting factor 3