PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma47g00320.1
Common NameZOSMA_47G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 249aa    MW: 27253.1 Da    PI: 10.1893
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma47g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.35.7e-15188224135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg  k  Tp +Rrgp+g+++LCnaCGl ++ +g+
  Zosma47g00320.1 188 CTHCGIDKkgTPAMRRGPQGPRSLCNACGLTWANRGT 224
                      *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.5E-74580IPR010399Tify domain
PROSITE profilePS5132012.2494580IPR010399Tify domain
PfamPF062003.3E-104879IPR010399Tify domain
PROSITE profilePS5101712.709115157IPR010402CCT domain
PfamPF062031.2E-14115155IPR010402CCT domain
SMARTSM004015.6E-11182235IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814182242IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-11185236No hitNo description
Gene3DG3DSA:3.30.50.108.7E-14186229IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-12187235No hitNo description
PROSITE patternPS003440188215IPR000679Zinc finger, GATA-type
PfamPF003205.0E-13188224IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAESNIPPTI YISDSDDEKV QDVVGVAVGV GEAAPKNTNV TGSSIISNSN RLTLMYDGIV  60
YVFDGATEQK VQAVLRLLGE SEFGKSIVRT EPQLGKLRFK TFEDVLRQPN IPAKRVASLI  120
RFREKRKTRN FDKKIRYSIR KEVALGMKRY KGQFCGRAKP DDQNGASCSG VNPPPVPVDN  180
VPADPIQCTH CGIDKKGTPA MRRGPQGPRS LCNACGLTWA NRGTLRDISK SNKSGNITPV  240
SRQNEYIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577334.15e-64GATA transcription factor 18-like isoform X2
TrEMBLA0A0K9P1Y80.0A0A0K9P1Y8_ZOSMR; GATA transcription factor 24
STRINGXP_008794051.11e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-53ZIM-LIKE 2