PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma47g00590.1

Common Name

ZOSMA_47G00590

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 118aa MW: 13804.6 Da PI: 8.4993

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma47g00590.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.5	1.7e-08	13	87	2	75
trihelix 2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L +e++ ++r +++ + ++W +++++ + + r++ C kw++l ++ ik++e++ + ++ Zosma47g00590.1 13 WSLHEMLTLvLEIKVVYDKRGSSTISGHQKWNIIGDHLIALNICRNSSHCHRKWDSLISEHYTIKDWESRSRYQT 87 88888887747999999***************************************************9975444 PP

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MSRFTHSHII PDWSLHEMLT LVLEIKVVYD KRGSSTISGH QKWNIIGDHL IALNICRNSS 60 HCHRKWDSLI SEHYTIKDWE SRSRYQTAST SRSNGGDSYW CLESDKRKDL KLRIEFD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NZM7	5e-80	A0A0K9NZM7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	5e-23	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma47g00590.1