PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma48g00050.1
Common NameZOSMA_48G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 252aa    MW: 28144.4 Da    PI: 7.6612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma48g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057796120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++C+ C+k+F+r  n++ H+
  Zosma48g00050.1 77 FTCTVCSKTFNRYNNMQMHM 96
                     89*****************9 PP
2zf-C2H210.70.0016193210522
                      TTTEEESSHHHHHHHHHH CS
          zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                      +Cg  F++k +Lk Hir+
  Zosma48g00050.1 193 ICGSDFKHKRSLKDHIRS 210
                      8***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-57199No hitNo description
Gene3DG3DSA:3.30.160.602.3E-57796IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.30577104IPR007087Zinc finger, C2H2
SMARTSM003550.117799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355210127159IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.29E-5147184No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4150184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355150164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEKDEQSIVL TLCTPAPAVS SSNTTTTTTS TGSTLSLFQL SSKVIPSSIT IAHHNQDQPA  60
KFWIPSPAEI LVGPTQFTCT VCSKTFNRYN NMQMHMWGHG SQYRKGPESL RATTKQATSG  120
SMRLPCYCCA EGCRNNIDHP RSRPLKDFRT LQTHYRRKHG SRSFACRRCS KAFGVRGDWR  180
THEKNCGKLW FCICGSDFKH KRSLKDHIRS FGPGHEPHGV ESCYGDEEDE YDDDDDDVNG  240
GNGEVVLADE D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647907.11e-107PREDICTED: zinc finger protein WIP6
SwissprotQ8W0313e-99ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A0K9NZ380.0A0A0K9NZ38_ZOSMR; Zinc finger-like protein
STRINGVIT_01s0011g03100.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.19e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]