PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma48g00610.1
Common NameZOSMA_48G00610
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 206aa    MW: 23920.5 Da    PI: 10.3302
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma48g00610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.5e-32131042102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y++++d++++++isw+++g++f++++++ f++++Lpk Fkh+n++SF+RQLn YgF+++  ++          eF+++sFk+g+k+ll+
  Zosma48g00610.1  13 FLIKTYQLVDDPTNNDVISWNDDGSTFIIWQPSGFSRDLLPKLFKHNNLSSFIRQLNNYGFRRIIPKR---------LEFTNDSFKRGEKHLLS 97 
                      99**************************************************************9999.........78*************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  Zosma48g00610.1  98 EIHRHKN 104
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-469102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-3010101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3210101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-2813101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKMQFQIRKP TLFLIKTYQL VDDPTNNDVI SWNDDGSTFI IWQPSGFSRD LLPKLFKHNN  60
LSSFIRQLNN YGFRRIIPKR LEFTNDSFKR GEKHLLSEIH RHKNLPPFLL KNADIVAENH  120
MLREKNTYLN QKLSQMKNMG NNILMTTTNH AMPLDLMAIK STESTNKGTP LLLTLKVKEK  180
TGHEAKVLKQ QRVSEEQEQQ DSSPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-211310120119Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790507.19e-55heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-51HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0K9NZB71e-149A0A0K9NZB7_ZOSMR; Heat stress transcription factor B-2b
STRINGXP_008790507.13e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-45heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]