PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma48g00640.1

Common Name

ZOSMA_48G00640

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 194aa MW: 21367.6 Da PI: 9.3711

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma48g00640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++ +cprC+s+ntkfCyynnyslsqPry+Ck+CrryWt+GG+lrnvPvGgg+rknk+sss Zosma48g00640.1 33 EQHPFNCPRCNSSNTKFCYYNNYSLSQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKRSSS 94 567889****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-22	32	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	36	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MLASQLQYWS QEMMPPPPSP PPPSRPHRDP NKEQHPFNCP RCNSSNTKFC YYNNYSLSQP 60 RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK RSSSSPDIPK KPKFNQGDYH HQPQHGEDLS 120 LFFTTPQHPE LIAASPSSMD VLNTSTTAVY SSGGRFGLQD LRSSNSTANN SLNFPSNGDM 180 VVGKAGSYGH GGE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021638405.1	7e-38	dof zinc finger protein DOF4.6-like isoform X2
TrEMBL	A0A0K9NZL0	1e-140	A0A0K9NZL0_ZOSMR; Dof zinc finger protein
STRING	XP_002515648.1	2e-35	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	3e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma48g00640.1