PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma49g00450.1

Common Name

ZOSMA_49G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Nin-like

Protein Properties

Length: 351aa MW: 39260.7 Da PI: 6.8335

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma49g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.9	9.8e-24	200	248	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + ++le++s F+lpi++A+ +L++c+T+LK++CR++GIkRWP+Rk+ks Zosma49g00450.1 200 EALTLEEISTLFHLPIAQASINLQLCTTALKKACRRHGIKRWPYRKVKS 248 679*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.098	189	269	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-20	202	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEDDFQYSLP DEIQQQLNSF TSEFVEPLCL SPPHFHHHHS PSPPPPQPPL DAADSERLLL 60 LQTVNKHHQL PPLLYDEIST DASSVEDFVL PPWCLIDQID YTCHGCHQLR EVIHGNDISV 120 SDQPEWVQFW SGEAVSRRIW IGKATRGSEA VQATSAISTA LDNNTGAGLN SPAPIPEPET 180 ETQETMFQKT GIAAQRERAE ALTLEEISTL FHLPIAQASI NLQLCTTALK KACRRHGIKR 240 WPYRKVKSAD KKIAQLHKVL KTQTGTDATL AEVELAQIKE VRNIACEGYD GKIKRIQGWI 300 SEKMDSLRCQ SGIQAEKTLI EISKLKDKIK RAVIKKNRKG KTSIFNAELV *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEDDFQYSLP DEIQQQLNSF TSEFVEPLCL SPPHFHHHHS PSPPPPQPPL DAADSERLLL  60
LQTVNKHHQL PPLLYDEIST DASSVEDFVL PPWCLIDQID YTCHGCHQLR EVIHGNDISV  120
SDQPEWVQFW SGEAVSRRIW IGKATRGSEA VQATSAISTA LDNNTGAGLN SPAPIPEPET  180
ETQETMFQKT GIAAQRERAE ALTLEEISTL FHLPIAQASI NLQLCTTALK KACRRHGIKR  240
WPYRKVKSAD KKIAQLHKVL KTQTGTDATL AEVELAQIKE VRNIACEGYD GKIKRIQGWI  300
SEKMDSLRCQ SGIQAEKTLI EISKLKDKIK RAVIKKNRKG KTSIFNAELV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NYS2	0.0	A0A0K9NYS2_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Zosma49g00450.1