PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma49g00520.1
Common NameZOSMA_49G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 176aa    MW: 19331.5 Da    PI: 8.6137
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma49g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer889.2e-28356359
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                     + +Y++C++NhAa+lG++a+DGCgE++p++++   + +++CaACgCHRnFHR+ ++e
  Zosma49g00520.1  3 RETYRDCMRNHAATLGTYATDGCGEYTPNPSS---TGGMQCAACGCHRNFHRKVPVE 56
                     679*************************9555...699***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-22553IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-22552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.182653IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-15652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.82E-1472144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-2575145IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-2386144IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERETYRDCM RNHAATLGTY ATDGCGEYTP NPSSTGGMQC AACGCHRNFH RKVPVESSDA  60
NNLVVQLAHS PSSTAEGRTM SDGTRRRTRT KFSNEQKEKM LMFSEKIGWR IPRRDETVDR  120
VGMFCREIGI SRQIFKVWMH NHKNDNSSSS SAAAVAGGDA DGGDDVHKSK PNASV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-19841491679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263466.11e-53PREDICTED: zinc-finger homeodomain protein 1
SwissprotA2XLF41e-44ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-44ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0K9NZ301e-129A0A0K9NZ30_ZOSMR; Uncharacterized protein
STRINGVIT_17s0000g00810.t016e-53(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-38homeobox protein 30