PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma49g00920.1
Common NameZOSMA_49G00920
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 221aa    MW: 24844.5 Da    PI: 9.7365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma49g00920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.3e-143687155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +r++h ++Er+RR+ +N+ +  Lr+++P++   + +K + a+i+  A++Y+k+L+
  Zosma49g00920.1 36 QRMNHIAVERNRRRLMNDHLGVLRSIMPES---YIQKGDQASIVGGAINYVKELE 87
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-93483No hitNo description
Gene3DG3DSA:4.10.280.104.8E-133588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-153597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.0023586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-113687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-84192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEAQPFDSNE KKRKKMQQRQ RQRQPAGKNK EEIETQRMNH IAVERNRRRL MNDHLGVLRS  60
IMPESYIQKG DQASIVGGAI NYVKELEHLL LTLELKKIAV VKEMKSSDTR EEANEISFLN  120
PRFSSSSTQN NRWLSANVDV TLIDSHANIR ILVEKKRGQL MRIVAGFQAL GLAVLHLNVT  180
TLEDPMVAYS FSAKLEEGCS LTSADNIAGA VHHVLSLIEG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014KKRKK
23647RMNHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731905.11e-73transcription factor bHLH71-like isoform X2
RefseqXP_022732027.11e-73transcription factor bHLH71-like isoform X1
SwissprotQ9SK916e-53BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0K9NZ671e-161A0A0K9NZ67_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGGorai.008G225800.14e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]