PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00100.1
Common NameZOSMA_4G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 214aa    MW: 25708.4 Da    PI: 9.7757
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.4e-35251152101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk+ye+++d++++ ++sws+++nsf+++d +++++ +Lp+yFkh+nfaSF+RQLn+YgFkk+++e+         weF++++F kg+k+ +++
  Zosma4g00100.1  25 FLKKTYEMVDDPSTDVIVSWSSSNNSFIIWDLQKLSDILLPSYFKHNNFASFTRQLNTYGFKKIQTER---------WEFANEYFLKGRKDVMKN 110
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr++
  Zosma4g00100.1 111 IKRRN 115
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.4E-4821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3223114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-3623114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MESEAERVSP HPLVFVEEDG LLTPFLKKTY EMVDDPSTDV IVSWSSSNNS FIIWDLQKLS  60
DILLPSYFKH NNFASFTRQL NTYGFKKIQT ERWEFANEYF LKGRKDVMKN IKRRNYNTNS  120
LKSKIKLKEK DEEKKKHHKR QDCSRHEEAY IHNVLERHRE FNMIEICNLK QKLRSLEERL  180
GQIERKHQNM NLLITRAIQN PAFCYDICRR FKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-232511429129Heat shock factor protein 1
5d5v_B7e-232511429129Heat shock factor protein 1
5d5v_D7e-232511429129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NY551e-157A0A0K9NY55_ZOSMR; Heat stress transcription factor A-7a
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.13e-41heat shock transcription factor A7A