PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00190.1
Common NameZOSMA_4G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 139aa    MW: 16298.6 Da    PI: 9.2034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.88.8e-111387275
        trihelix  2 WtkqevlaLi.earremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                    W+ +e l+Li e+    +e+ +++ +  ++W  +++++ +  + r++ qC+ kw++l  +y+ ik++e++ + ++
  Zosma4g00190.1 13 WSLHEMLTLIlEIDAVYDEHGSNTISSHQKWNIIADHLIALNICRNSFQCRGKWDSLLFEYRVIKDWESRSRYQT 87
                    9989988886499999999999999*******************************************9975444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-81284No hitNo description
PROSITE profilePS500906.621370IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSRFTRSRII PDWSLHEMLT LILEIDAVYD EHGSNTISSH QKWNIIADHL IALNICRNSF  60
QCRGKWDSLL FEYRVIKDWE SRSRYQTAST SRSNGDDSYW CLKADKRKDL KLPIEFNREL  120
FGLIEGFVIK RSSKPKIT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P0K72e-97A0A0K9P0K7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-28sequence-specific DNA binding transcription factors