PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00210.1
Common NameZOSMA_4G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 248aa    MW: 28792.3 Da    PI: 9.7037
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.34.5e-091387275
        trihelix  2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                    W+ +e l+L +e+     er +++  + ++W  +++++ +  + r++ qC+ kw+++  +y +ik++e++ + ++
  Zosma4g00210.1 13 WSLHEMLTLvLEINAIYAERGSSTIPAHQKWNLIADNLIALNICRNSFQCRRKWDSMLSEYYAIKDWESRLRYQT 87
                    888888777468888888888899999*****************************************9975444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-71281No hitNo description
PROSITE profilePS500906.6441370IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSSFTRSQII PDWSLHEMLT LVLEINAIYA ERGSSTIPAH QKWNLIADNL IALNICRNSF  60
QCRRKWDSML SEYYAIKDWE SRLRYQTAST SKSNGGDSYW CLESDKRKDL KLPIEFDREL  120
FWLIEGFINK KVVNKKVIKG KDHMKVMPEI ETPSSPQSSS ASSLSLSGGQ REKKRKMSRK  180
MKMKDKIMEI FRESCDQLLL DVKHIETIFN KKPNAANIEE FIRQMQQMDK LVTLFGEVIS  240
TLDRLNV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P0I40.0A0A0K9P0I4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-29sequence-specific DNA binding transcription factors