PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00290.1
Common NameZOSMA_4G00290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 225aa    MW: 23974.2 Da    PI: 10.5717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-2072122155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  Zosma4g00290.1  72 THFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAALAYDEAARNLRG 122
                     589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.83E-2872132No hitNo description
PfamPF008471.9E-1372122IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2173132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-3073130IPR001471AP2/ERF domain
SMARTSM003801.6E-3573136IPR001471AP2/ERF domain
PROSITE profilePS5103221.74673130IPR001471AP2/ERF domain
PRINTSPR003677.4E-107485IPR001471AP2/ERF domain
PRINTSPR003677.4E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTATPCRNST PKHLSPFVTL AAEMASEPLW VGKDGYTTAA TNMISVSSGG GDKGTATVMG  60
GGGSQKSTGR ETHFRGVRKR PWGRFAAEIR DPWKKTRKWL GTFDTAEEAA LAYDEAARNL  120
RGPKAKTNFG YSFVGSSNVV AIASPPPPPL SDPPVALALS LSSPPTGVPM TRRRTDDGRE  180
FGSGGYRFEA VQVVVRGEQE KTLATVSRKK IPLSFDLNLP AITF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2073129562ATERF1
3gcc_A6e-2073129562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802835.12e-52ethylene-responsive transcription factor 11-like
TrEMBLA0A0K9NYC01e-162A0A0K9NYC0_ZOSMR; Uncharacterized protein
STRINGXP_008802835.18e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-24ethylene responsive element binding factor 3