PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g01130.1
Common NameZOSMA_4G01130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRF
Protein Properties Length: 311aa    MW: 34190.2 Da    PI: 8.1412
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g01130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.3e-25128172145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rs+k++e+
  Zosma4g01130.1 128 DSEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRARSKKPVEQ 172
                     689***************************************996 PP
2QLQ46.98.3e-176595333
             QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                    FT+ Q+q+Lk+Q+l+yK+L++ +P+P +Ll+
  Zosma4g01130.1 65 FTPVQWQELKRQALIYKHLVSAVPIPVDLLL 95
                    *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-56399IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.876499IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-126594IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.888128172IPR014977WRC domain
PfamPF088793.0E-21130171IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESTGTKYGR QPSKLVQSSV SSSSGPSCIP FSGITDYFND DVGGGFGFYR GDVERITTTY  60
IPFFFTPVQW QELKRQALIY KHLVSAVPIP VDLLLYDSTA AARHLYPTPS IIPEEAIGRT  120
HRFKNNPDSE PGRCRRTDGK KWRCSRDVAP DQKYCERHMH RGRARSKKPV EQPPREKLTT  180
ADISTEITSQ GSRCMDWMRI GTGGDGDSSD RKRSHCSEDF VEKPTKAENV SSSPSDLTLS  240
ISSMATVADP DSSTSTATPQ LIQMGVGFIN NGIERATHPL GGPLGEVFHS VTSTSFPRRD  300
DVSSPVHLNT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYL10.0A0A0K9NYL1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2255846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-33growth-regulating factor 2