PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma4g01280.1

Common Name

ZOSMA_4G01280

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 265aa MW: 28740 Da PI: 9.4912

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma4g01280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.4	8.9e-35	40	98	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++cprC+s+ntkfCyynnys sqPryfCkaCrr+Wt+GG+lrnvP+Gggr+++k+s+ Zosma4g01280.1 40 PKVSCPRCHSDNTKFCYYNNYSRSQPRYFCKACRRHWTNGGTLRNVPIGGGRKNKKRSK 98 5789***********************************************98888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-20	39	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-31	41	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.195	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTSGMFLRWC QKERSMVVGS SDSKLVSGDL SEKLTSRRPP KVSCPRCHSD NTKFCYYNNY 60 SRSQPRYFCK ACRRHWTNGG TLRNVPIGGG RKNKKRSKTT HRLASSSSSS AIKNDAGVNY 120 ISEIFKSRRI SFSPSIMTSG SYLNNDTGGG GNILRPFLAN FPDSSLPSTY SFLPFGSNRE 180 EECVTGEGYG MIKNGAGNCY YGVGDSSWQK TETTTACSFP NLTGFEFSST IGGGSSGGSG 240 GGYWASYWDE LGGFSTFPPC NGFP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NYM2	0.0	A0A0K9NYM2_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-27	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Zosma4g01280.1