PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma506g00020.1
Common NameZOSMA_506G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 484aa    MW: 54070.9 Da    PI: 8.4119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma506g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-18158204148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd ll+ +vk++G + W+ I++++  gR +kqc++rw+++l
  Zosma506g00020.1 158 KGQWTPEEDSLLISLVKEHGAKKWSDISKKLV-GRIGKQCRERWHNHL 204
                       799*****************************.*************97 PP
2Myb_DNA-binding55.21.6e-17210252145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W+ eEd+llv+ +++lG++ W++Ia++++ gRt++ +k++w+
  Zosma506g00020.1 210 KDNWSDEEDLLLVRSHRKLGNR-WAKIAKRIP-GRTENAIKNHWN 252
                       689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.169153208IPR017930Myb domain
SuperFamilySSF466892.24E-30156251IPR009057Homeodomain-like
SMARTSM007177.5E-17157206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-28159211IPR009057Homeodomain-like
PfamPF139212.4E-19161220No hitNo description
CDDcd001676.91E-16161204No hitNo description
PROSITE profilePS5129421.801209259IPR017930Myb domain
SMARTSM007173.7E-17209257IPR001005SANT/Myb domain
CDDcd001674.77E-14212255No hitNo description
Gene3DG3DSA:1.10.10.602.1E-20212257IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MQLILFLDSL ILHSSPTSFP FSPSSAHFAT SLFLLLSLAG RQMSQSSLSP PSPPRSPAEE  60
EAGDKHDIHV TRATQSFPLK SIKRYTTQFL RPAPPFTSLE RFLRSKTSYG SSPLVNHSTP  120
LPSMSKSRNG TMPIRVDPGA VPPATGNNTV SSEASVIKGQ WTPEEDSLLI SLVKEHGAKK  180
WSDISKKLVG RIGKQCRERW HNHLRPDIKK DNWSDEEDLL LVRSHRKLGN RWAKIAKRIP  240
GRTENAIKNH WNATKRRQKS RRKMGKKNPS DIIINRSNIS TVLQDYILSL ETANNVITSS  300
SSSTETELIR ENTLFDSTAL IPPPSYNYHG YNGGPSSADS SPVLYQTMFE EPPSSDTMFT  360
LDPPVSPEYC MLMYPNPTSE DTVIGATSES YGLSPSVSDV NYINMSTFMS NNTDEMMMNR  420
ERQEQPLSLG MGINGENLGI IASNPTSSSS TEYKRELDLM EMMSMATYDR NSEEHYKYWC  480
NGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-451562582104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-4415625856158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-4415625856158MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-451562582104C-Myb DNA-Binding Domain
1msf_C7e-451562582104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYD60.0A0A0K9NYD6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-60myb domain protein 118