PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma50g00250.1
Common NameZOSMA_50G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 258aa    MW: 29374 Da    PI: 6.522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma50g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-142572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv ++ ++G g+W++ ++  g+ R++k+c++rw +yl
  Zosma50g00250.1 25 KGSWTEAEDVKLVTYILRHGYGNWRALPKQAGLLRCGKSCRLRWVNYL 72
                     799*****************************99************97 PP
2Myb_DNA-binding47.25.3e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE++ ++++++ lG++ W+ Ia++++ gRt++++k+ w++
  Zosma50g00250.1  78 RGNFSKEEEDTIIRLHQFLGNK-WSDIASKLP-GRTDNEIKNVWNT 121
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2312072IPR017930Myb domain
SuperFamilySSF466891.87E-2822119IPR009057Homeodomain-like
SMARTSM007179.0E-102474IPR001005SANT/Myb domain
PfamPF002492.5E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-222679IPR009057Homeodomain-like
CDDcd001671.89E-82772No hitNo description
PROSITE profilePS5129422.72473127IPR017930Myb domain
SMARTSM007174.3E-1377125IPR001005SANT/Myb domain
PfamPF002497.8E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2580128IPR009057Homeodomain-like
CDDcd001673.35E-980123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRKRGTMIGT SKGRAPAYEK NGLRKGSWTE AEDVKLVTYI LRHGYGNWRA LPKQAGLLRC  60
GKSCRLRWVN YLRPDIKRGN FSKEEEDTII RLHQFLGNKW SDIASKLPGR TDNEIKNVWN  120
TRLKKRLISI LPPQSLTSSI TCNPTDNIEI NQYLGMKGDN SMQDALDQFS TAIMGDDVLD  180
RCVTETNEEE NNNLAPFQQP IDMSWDSNNV WWIQYLEREL DLVDSNNQQP TVSSQLPHLF  240
QGEDDLTSDN GGITSHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25231275108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020690564.11e-62myb-related protein Zm1-like
TrEMBLA0A0K9NXW90.0A0A0K9NXW9_ZOSMR; Myb domain protein 15
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-64myb domain protein 15