PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma50g00660.1
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 875aa    MW: 96582.9 Da    PI: 8.8013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma50g00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18406506199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  Zosma50g00660.1 406 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQPEGLPLKVQDATGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 497
                      89**************************666667778***************9989999999***9.********************987.777 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      +lv++++++
  Zosma50g00660.1 498 KLVMGFRKA 506
                      788777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-30399512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-19403505IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-21404505No hitNo description
PROSITE profilePS5086311.166406507IPR003340B3 DNA binding domain
SMARTSM010192.6E-20406507IPR003340B3 DNA binding domain
PfamPF023621.8E-15406505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MTEPSSSSLS VVAVVGGAGG GGGGGAKICI NTFCKETTKS KKGWRLRSGE DADLCDRCFA  60
SYEQGSFCDT FHSENDGWRK CVTCQKRVHC GCIVSVASFV LLDVGGIDCV SCAQKCCVLP  120
VSAPNLMWSS LIYVSPESER PKEPPGKNWN QLTASSQVPG QWRPAPNAWS SSIAARSELH  180
QRLSFEFDRP NSIEKLLSTG RSSLSEKRKV DDLHERKVSN GLNRITTDRS SNGNSGVKSP  240
GFTVFHREDG SLDKLQESNI LMVDSDPIAT RKGIIHGSRF SSSSGVKIEK GHLQASSLKD  300
DPTTYLASLS PPFSPSLDAN NQARGTTNKT QGQTASGPMA KQLYHNSNHN SGIDPTNETH  360
TQMRNGRLRV DARSRNQLLP RYWPRITDQE LQQISGDSNS IIIPLFEKML SASDAGRIGR  420
LVLPKKCAEA YFPAISQPEG LPLKVQDATG KDWVFQFRFW PNNNSRMYVL EGVTPCIQSM  480
QLQAGDTVTF SRIDPEGKLV MGFRKASNTQ NEQASKLVKG LSSTSETSNI NIKHGDLILS  540
VPSCPVKAGV EFTLTSTADR TRLKNDNSEF KQKERPISKF SVPPSKRKIG MVTSKRKRLR  600
IENEDSLELK LTWEEAQELL RPPPNHHPSI MVIEGHEFEE YEEAPVFGKP TIFITNHDGS  660
SSLSTQEISK ELEDVLPLNN ANPRKNKAKD ENDTVNGSDG LDTLANLAIL VEGESPSQPT  720
TTKHPRHRPG CTCIVCIQPP SGKGPKHKQS CCCNVCLTVK RRFRTLLLRK EKRQSEKEAE  780
TARRKQKLAL SPEASLQQIG DKSSVYKPTD IHQKRKTAMD SDEVANADTD RRKELLSVVK  840
TEIDLNIQPE REEEISPVSD IYNAKKLSNQ NPKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-663845142132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1759772KRRFRTLLLRKEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806760.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0K9NXZ00.0A0A0K9NXZ0_ZOSMR; B3 domain-containing protein (Fragment)
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-133HSI2-like 1