PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma51g00060.1
Common NameZOSMA_51G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 161aa    MW: 18028.5 Da    PI: 8.9371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma51g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-183988255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aaka++ a  +l+g
  Zosma51g00060.1 39 RYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAIAAAKAYDTAVFCLRG 88
                     8******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-283897No hitNo description
PfamPF008472.5E-113988IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-213997IPR016177DNA-binding domain
PROSITE profilePS5103223.0643996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-313997IPR001471AP2/ERF domain
SMARTSM003806.1E-3839102IPR001471AP2/ERF domain
PRINTSPR003674.2E-124051IPR001471AP2/ERF domain
PRINTSPR003674.2E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGEDCPTVAS LPLSSPAAEA AAASTSLYVH RQREKPQKRY RGVRMRKWGK WVAEIREPNK  60
RSRIWLGSYS TAIAAAKAYD TAVFCLRGRS ARLNFPEELA EDGRDCRDDQ HLSAALIRMK  120
ATEVGARVDA VQKVWKNPDL NQKPIPECSS DVEEEWVMHS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1639991475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082291.17e-50PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ8W3M31e-42RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A0K9NXK41e-115A0A0K9NXK4_ZOSMR; Ethylene-responsive transcription factor
STRINGVIT_18s0001g10150.t012e-50(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.14e-36related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]