PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma51g00160.1
Common NameZOSMA_51G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 210aa    MW: 23725.7 Da    PI: 6.6688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma51g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28133192159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDg +WrKYGqK  kg+++pr+YYrCt +  Cpv+k+v+++ +d +++++tYeg+Hnh+
  Zosma51g00160.1 133 MDDGGQWRKYGQKISKGNPCPRAYYRCTITsACPVRKHVQKCVDDLSILITTYEGTHNHP 192
                      58**************************9999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-31118194IPR003657WRKY domain
SuperFamilySSF1182903.79E-26126194IPR003657WRKY domain
PROSITE profilePS5081128.954128194IPR003657WRKY domain
SMARTSM007742.0E-31133193IPR003657WRKY domain
PfamPF031061.7E-24134192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNKALDVQFR DEEILLSDYN GDGDDEFAKY SSRKQQEELE SKRAEMGEMR EENKRLIPTN  60
TSTVLSSMEE DVDDLVSLRL GMRSPPPSLP IENNKRSGDD NIHQNIPISQ DSQQIQVKKA  120
RVTVRARCDA PMMDDGGQWR KYGQKISKGN PCPRAYYRCT ITSACPVRKH VQKCVDDLSI  180
LITTYEGTHN HPLPMLAATT TRHTTTNIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22124195878Probable WRKY transcription factor 4
2lex_A1e-22124195878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645581.12e-52PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A0K9NXL51e-156A0A0K9NXL5_ZOSMR; Uncharacterized protein
STRINGGSMUA_Achr10P28190_0012e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-45WRKY DNA-binding protein 72