PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g00060.1

Common Name

ZOSMA_52G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 287aa MW: 32177.2 Da PI: 7.6302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.7	1.2e-32	42	185	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 lp+G++F+Ptd+el+ e+L+ kv++++ +++ +i++++ i++++P++Lp v+ + +fF++ +k+y+tg+rk+r+ Zosma52g00060.1 42 LPAGVKFDPTDQELL-EHLEGKVRNDSqllhSHIDGFIPTLEgengICYTHPQKLP-GVNMDGLIRHFFHRPSKAYTTGTRKRRKvhtdehagi 133 799**********.99**9997765333334544423334******.555666778**************7566655554 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g ++g kk+Lv+y g+++k+ekt+Wvmh+y+l Zosma52g00060.1 134 GGETRWHKTGKTRPVLV-NGVVKGQKKILVLYtnYGKRRKPEKTSWVMHQYHL 185 33778********.99********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-37	35	204	IPR003441	NAC domain
PROSITE profile	PS51005	31.137	42	204	IPR003441	NAC domain
Pfam	PF02365	6.1E-15	43	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSWCNRNNDI CTDEIIVKVC PSCGYRMNNA HEQGTIQDLL GLPAGVKFDP TDQELLEHLE 60 GKVRNDSQLL HSHIDGFIPT LEGENGICYT HPQKLPGVNM DGLIRHFFHR PSKAYTTGTR 120 KRRKVHTDEH AGIGGETRWH KTGKTRPVLV NGVVKGQKKI LVLYTNYGKR RKPEKTSWVM 180 HQYHLGSDDE EKEGELVVSK VFYQTQPRQC HGKNLSVQSI FVVNQMTPTV IKDNPSVAAS 240 DNCYSTPPPP ILDYNTINGN NNNENEDGKM IAQFSLNADD GSAFLH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020573060.1	1e-115	NAC domain-containing protein 73-like isoform X1
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0K9NX34	0.0	A0A0K9NX34_ZOSMR; Putative NAC domain-containing protein 21/22
STRING	ORGLA01G0213300.1	1e-112	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-113	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Zosma52g00060.1

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]