PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g00380.1

Common Name

ZOSMA_52G00380

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 303aa MW: 32707.3 Da PI: 7.4733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g00380.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	9	29	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+++F++ +L H+r+H Zosma52g00380.1 9 CKLCDRRFPSGKSLGGHMRSH 29 ********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.162	7	29	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	7	29	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-9	7	29	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.95E-6	7	29	No hit	No description
PROSITE pattern	PS00028	0	9	29	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.95E-6	128	152	No hit	No description
Pfam	PF13912	5.7E-9	132	153	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	133	153	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-10	209	233	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	210	232	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.7	210	232	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	212	232	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDGGVEHGCK LCDRRFPSGK SLGGHMRSHV MSYGLRKNPK KTTKIAEEED GEIEMELKEV 60 ALCLMMMSAD STASATAEFS DKNSAVAEDD GVDDDDEDEK EREDQYLRKR KSRKRSDYSS 120 GLEELGKIKK SRFQCSGCKK SFGSYQALGG HRAANKRTKG GCSSSIKKET ETETESDPTP 180 FVSVLESDGV QQPPPSVGSN KYKNKKASHF ECSLCFKVFG SGQALGGHKR AHLTVNSGNG 240 YVDAPEQRAS TISPDGLLFD LNVPAGFTDG NSGVSNEERV GSSLVSWSTG RKRGHSLIVS 300 GL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NZF9	0.0	A0A0K9NZF9_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	5e-16	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Zosma52g00380.1