PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g00410.1
Common NameZOSMA_52G00410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 183aa    MW: 20357.8 Da    PI: 5.1182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g00410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-191363256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr +  +g+Wv+eIr+p++   ++r++lg+f tae+Aa+a++ a+++++ge
  Zosma52g00410.1 13 HYRGVRMRN-WGKWVSEIREPRK---KTRIWLGTFPTAEMAARAHDVAALSIKGE 63
                     6*****998.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-131363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-321371IPR001471AP2/ERF domain
CDDcd000181.74E-331372No hitNo description
SuperFamilySSF541713.79E-221371IPR016177DNA-binding domain
PROSITE profilePS5103223.4061370IPR001471AP2/ERF domain
SMARTSM003803.2E-381376IPR001471AP2/ERF domain
PRINTSPR003674.2E-111425IPR001471AP2/ERF domain
PRINTSPR003674.2E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKKRNREDGG GDHYRGVRMR NWGKWVSEIR EPRKKTRIWL GTFPTAEMAA RAHDVAALSI  60
KGESAFLNFP ELASELPRPA TSSPKDIQAA AAKAASATFS CNQRIRHTED AENVIESNII  120
NTSPVLEEVV EEDKTLFDLP DLFVDHCSNV ECFCSFLLST STADDAGGEI SFRQESPHFL  180
WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-181070972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258834.11e-54PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9NZJ31e-133A0A0K9NZJ3_ZOSMR; Uncharacterized protein
STRINGcassava4.1_021971m1e-55(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]