PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g00500.1
Common NameZOSMA_52G00500
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 290aa    MW: 31187.1 Da    PI: 4.8648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g00500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-06266288223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cgk+F +   L++Hi+  H
  Zosma52g00500.1 266 VCKSCGKRFISENALQSHIKAkH 288
                      7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0049265288IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699265289IPR007087Zinc finger, C2H2
PROSITE patternPS000280267288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAALEFWGVE VKPGKKIICQ PGDEKFIHLS QAALGEVKDK SAKSVQLTVN FEGSKFVIGT  60
LSSKSCTQIA YDVVFQKNFE LSHNWNDGSV FFIGYKTQFE NGGSEDDSET EKHAALVNKK  120
VKTSKINAKP AEPNKDGSDS NDDVSEDGSD DDASEEGSDN DDAPEEGSDD DDANEVVSSD  180
DAGDNDSSDE EKSYSFKAET SKKRTADSDS DSESKVPKKK VKLATPPGKT GVNNGKMKSP  240
YTVTPYPTMK QTSKSAAKPQ TSKSVVCKSC GKRFISENAL QSHIKAKHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NXB60.0A0A0K9NXB6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-28histone deacetylase 2C