PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g00860.1
Common NameZOSMA_52G00860
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 244aa    MW: 26958.4 Da    PI: 9.4593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g00860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-0593115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+ksFs++  L  H+ +H
  Zosma52g00860.1  93 HKCNKCNKSFSSHQALGGHMASH 115
                      79*******************96 PP
2zf-C2H213.40.00024155177123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F++   L  H r+H
  Zosma52g00860.1 155 HRCSVCSKVFPSGQALGGHKRRH 177
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-592116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.82E-992115No hitNo description
SMARTSM003550.003893115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01493115IPR007087Zinc finger, C2H2
PfamPF139124.5E-1093117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SuperFamilySSF576673.82E-9150177No hitNo description
PfamPF139121.1E-13154179IPR007087Zinc finger, C2H2
SMARTSM003550.02155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDPQQDSSEE NDEIRLESWC KRKRSTMMRR RHNDQLQTEE DYLASVCLYM LSRDKSHVTS  60
VNKEWRTKEE HEDFSYHVAP IPKRQQQAVA APHKCNKCNK SFSSHQALGG HMASHHRKIT  120
TGLGSGDILH SSVPTSVPSA TVIPKVSFSK EQKAHRCSVC SKVFPSGQAL GGHKRRHYDG  180
GVSTSRVTGD SGHNNNKSMG VVFDIDLNIP PIQDAAVSYV VTTATTEGVI AMKKPRGLLI  240
IPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NXC60.0A0A0K9NXC6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-29salt tolerance zinc finger