PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g00940.1

Common Name

ZOSMA_52G00940

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 196aa MW: 22453.6 Da PI: 7.673

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g00940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	33	88	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ R++++ eq + Le++F ++r++ +++ +LA+++gL+ +qV vWFqNrRa++k Zosma52g00940.1 33 KQMRRRLSVEQATFLEKCFWSERKLECARKVHLASETGLDPKQVVVWFQNRRARWK 88 5689***************************************************9 PP
2	HD-ZIP_I/II	104	1.2e-33	36	126	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rrls eq+++LE++F +e+kLe rKv+la+e gl+p+qv vWFqnrRAR+k+k++E++y+++k+ +++++ e+ +L++ev +L+++l++ Zosma52g00940.1 36 RRRLSVEQATFLEKCFWSERKLECARKVHLASETGLDPKQVVVWFQNRRARWKSKKMEEEYNKIKSLHNTISVEKIHLQTEVIHLTNQLAD 126 89************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-18	26	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.661	30	90	IPR001356	Homeobox domain
SMART	SM00389	9.6E-15	32	94	IPR001356	Homeobox domain
Pfam	PF00046	7.9E-16	33	88	IPR001356	Homeobox domain
CDD	cd00086	2.88E-13	33	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-17	35	97	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAEMEKKVNK AMRRRRKQVS TSEEEVSGDI EGKQMRRRLS VEQATFLEKC FWSERKLECA 60 RKVHLASETG LDPKQVVVWF QNRRARWKSK KMEEEYNKIK SLHNTISVEK IHLQTEVIHL 120 TNQLADALKQ IQHLHSILNI SHCAGGARDN IGGGDEFNFS QLQAAELNGE VQEHVGMENM 180 EGMDLDVFGL FNGFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020584233.1	2e-35	homeobox-leucine zipper protein HOX12-like isoform X1
Swissprot	O23208	7e-34	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0K9NXM9	1e-142	A0A0K9NXM9_ZOSMR; Uncharacterized protein
STRING	XP_010531178.1	3e-33	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-36	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Zosma52g00940.1

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]