PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g01230.1

Common Name

ZOSMA_52G01230

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 292aa MW: 32112.1 Da PI: 7.9746

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g01230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	35	94	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn+k+ Zosma52g01230.1 35 QDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNIPVGGGCRKNNKR 94 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	33	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-33	36	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MNSSSNSSSG ELIPPCSTRM MPPPAVLERR LRPQQDQALK CPRCDSTHTK FCYYNNYSLS 60 QPRYFCKTCR RYWTKGGSLR NIPVGGGCRK NNKRPPVNGG KKPMHHVTVP EVRHHPPLIL 120 DQGQYHLLNT TLPTASLFGD QRGSGLLPPI TERDLASFME CKYDLSMYDN PDVIDHQNVA 180 GDVERYGPII GNPAAQIFSC ANNGNIIDGY GEIASTVGYH GMSPLGFSIN GSSNHQPSLM 240 STPLSFDGGD DSVHVAGDTK PNGKLLSLEW QDSGRDVGFN AKWTSWDNFH I*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NZQ1	0.0	A0A0K9NZQ1_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma52g01230.1