PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g01260.1

Common Name

ZOSMA_52G01260

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

YABBY

Protein Properties

Length: 120aa MW: 13186.1 Da PI: 7.8145

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g01260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	59.1	1.9e-18	8	82	5	75
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas...qllaaeshldeslkeelleel 75 + s+q+Cyv+C+fCnt+l+v P +sl++ +tv CGhC +ll v++ as +l a+ h d +++e + + Zosma52g01260.1 8 DLSNQLCYVHCSFCNTLLLVGAPCNSLLRAeLTVICGHCQTLLRVKIGGASffpLQLVASPHEDSNMNEAVGGRE 82 6899********************987549*************9998777677777776777777654433 PP
2	YABBY	28.9	3.7e-09	88	118	106	133
YABBY 106 deev.prvpp..virPPekrqrvPsaynrfi 133 ++e+ p p+ v++PPekrqr+ sayn+f+ Zosma52g01260.1 88 KHEItPTRPRvaVNKPPEKRQRAASAYNQFM 118 3333122222348*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.8E-25	10	118	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MSYDPLLDLS NQLCYVHCSF CNTLLLVGAP CNSLLRAELT VICGHCQTLL RVKIGGASFF 60 PLQLVASPHE DSNMNEAVGG RENDNGEKHE ITPTRPRVAV NKPPEKRQRA ASAYNQFMR*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248516.1	1e-27	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	4e-18	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0K9NZU0	6e-84	A0A0K9NZU0_ZOSMR; Crabs claw
STRING	XP_010248516.1	4e-27	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-20	YABBY family protein

Link Out ? help Back to Top
Phytozome	Zosma52g01260.1

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]