PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma537g00050.1

Common Name

ZOSMA_537G00050

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WOX

Protein Properties

Length: 161aa MW: 18128.5 Da PI: 10.4128

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma537g00050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	96	156	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ q+++Le+lF++ n ++ + +++e++ +l +++e++V++WFqNrRa+ k+ Zosma537g00050.1 96 RQRWNPTAMQVQILEDLFKQgNGTLIKGKIKEITLELsqhgEISETNVYNWFQNRRARCKR 156 89***************99************************************97 PP
2	Wus_type_Homeobox	90.2	2.1e-29	95	158	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Pt+ Q++iLe+l+k+G t k +i++it eL+++G+i+++NV++WFQNr+aR ++kq Zosma537g00050.1 95 ARQRWNPTAMQVQILEDLFKQGNGTLIKGKIKEITLELSQHGEISETNVYNWFQNRRARCKRKQ 158 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-12	74	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.568	92	157	IPR001356	Homeobox domain
SMART	SM00389	6.7E-7	94	160	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-14	95	159	IPR009057	Homeodomain-like
CDD	cd00086	1.07E-8	96	158	No hit	No description
Pfam	PF00046	1.6E-16	96	156	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MDGSGGGERR KRTRMEKMNS EDIAMGGVGG RVSTAKVMTN EQIEILREQI SIYATLTEQL 60 AAMHKSTSRS GTMTTSSSSY GGNEQQQCHQ NMITARQRWN PTAMQVQILE DLFKQGNGTL 120 IKGKIKEITL ELSQHGEISE TNVYNWFQNR RARCKRKQQR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARCKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781303.1	3e-45	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-45	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0K9NZE4	1e-114	A0A0K9NZE4_ZOSMR; WUSCHEL-related homeobox 14
STRING	XP_008781303.1	1e-44	(Phoenix dactylifera)
STRING	MLOC_56124.2	1e-44	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-38	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Zosma537g00050.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]