PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma53g00970.1
Common NameZOSMA_53G00970
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WOX
Protein Properties Length: 231aa    MW: 26404 Da    PI: 9.1765
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma53g00970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-20767257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zosma53g00970.1  7 STRWCPTPEQLMILEEMYRTgIRTPNAAQIRQITAHLsyygKIEGKNVFYWFQNHKARDRQ 67
                     58*****************99*************************************996 PP
2Wus_type_Homeobox120.19.1e-39668264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y++G+rtPn+++i++ita+L+ yGkie+kNVfyWFQN+kaR+rqk
    Zosma53g00970.1  6 PSTRWCPTPEQLMILEEMYRTGIRTPNAAQIRQITAHLSYYGKIEGKNVFYWFQNHKARDRQK 68
                       589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.09368IPR001356Homeobox domain
SuperFamilySSF466891.11E-11571IPR009057Homeodomain-like
SMARTSM003895.2E-6572IPR001356Homeobox domain
CDDcd000863.01E-5669No hitNo description
PfamPF000469.4E-18767IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-7967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQQPAPSTRW CPTPEQLMIL EEMYRTGIRT PNAAQIRQIT AHLSYYGKIE GKNVFYWFQN  60
HKARDRQKMR RRLSCLQQQQ NGQVLQAQAQ AQAQTLLSHQ IFHLELSPHP PSPSALLPHL  120
HFPYHHHLRR HQPSSHFLHQ TSSGYYNNQQ EPENMIPPPV MNLVCKLEPA PELVYEAPPT  180
NTIGCVNVPY CKPLKTLDLF PTRAENTGSL KDIDRTISSK SSYCSTSTTN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684347.12e-49PREDICTED: WUSCHEL-related homeobox 3B-like
TrEMBLA0A0K9NZ861e-171A0A0K9NZ86_ZOSMR; WUSCHEL-related homeobox 3B
STRINGXP_008776170.12e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-41WOX family protein