PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00230.1
Common NameZOSMA_54G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18543.5 Da    PI: 8.1712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171462149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+i  +s  qvtfskR+ gi+ KA E+Sv+C+++ +++ifs+ gk y +
  Zosma54g00230.1 14 KKIAKDSSLQVTFSKRKSGIFNKACEISVMCGVDLLIVIFSPGGKPYIF 62
                     568888999***********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-24665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.105666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-22780IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.3E-191562IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRKVFGRKK LELKKIAKDS SLQVTFSKRK SGIFNKACEI SVMCGVDLLI VIFSPGGKPY  60
IFGSPKVDAF LQNFLTGNPI LQPFDPYTNR ENSIDHLAAE YRMISLIFDK EKEYLNELNI  120
SLKDYGVVEY EGLNAHDLEV YLDNLKKLKE NLISYFDFLT TN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWE61e-114A0A0K9NWE6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-25AGAMOUS-like 62