PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00430.1
Common NameZOSMA_54G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 720aa    MW: 80276.8 Da    PI: 10.0263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-071465448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     W t+Ed+ll+ a +++G  +W+++++++         ++t   c+ r+++++
  Zosma54g00430.1 14 WGTWEDLLLAYALRRHGLLDWDSVSKEVRirtrrfpDKLTSQTCQQRYHDLR 65
                     ***********************************9889*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.44E-51068IPR009057Homeodomain-like
SMARTSM007170.00831067IPR001005SANT/Myb domain
CDDcd001677.67E-41464No hitNo description
PROSITE profilePS500905.9931465IPR017877Myb-like domain
PfamPF002491.4E-51464IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.101.8E-14335445IPR001487Bromodomain
SMARTSM002974.1E-11339447IPR001487Bromodomain
SuperFamilySSF473703.14E-16346444IPR001487Bromodomain
CDDcd043695.16E-13353442No hitNo description
PfamPF004397.5E-11357431IPR001487Bromodomain
PROSITE profilePS5001410.415358428IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDRSDGDKGN NEIWGTWEDL LLAYALRRHG LLDWDSVSKE VRIRTRRFPD KLTSQTCQQR  60
YHDLRRRFVV GEDDEDRRNF SDDSSVEKIP WMNQLLNLRV AELRREVLRY DVSIVSLQSK  120
LQRLTEEDVS KKPVVDRQDN VTPVASQENY GEEGKMENNF VTEFEPEKIS VKDGEDRPLS  180
LPNDLAVGEL LGNSCNESNS PQPKVEPSEP RLWPETQPDD VKPETESPNP ETRVEQKIAG  240
EGSFNGSTES LAKLRNAEEE EVGKAEKVFS RRLDSGESIA ESTGGGGDAV KENSDVQSSA  300
SLSKRKRHRW TKISFSGGSS GGCDSHEADE VSPNSGTREN ENNLEKSQPL AVFLKLIRSH  360
KDCSIFKRRL ESQETARFRS LIRQHVDLEM IRTKLEGAGF YNFVEFFRDL LLLCNNAIVF  420
FPKDSLEYTT AVDFREYVKK EVAANINVVT TPTTTTTTVK KMNKNKPHIS STTEPNPSSI  480
IAPKKSLSAK SKSVSEADDL VSEKPKIRTS VSPKRTSVSP KRDLEKELED VDKKKRERPA  540
VARGLRTTKA RGASMKKRIN VEVDGDCSQE PTKPTEKKTN GSGGSGEVAT IAAKKRSAVS  600
FLDRLNNTST LSPPSDNVSM SPRVKNAGSG TGKREQKRGG KTADKKKVQG GGVRHIGGRN  660
KQAVTVEEES TPTKRSVGRP PKKPPPTRKA QTSSKRAREP ERETLSQSSP VSNKKRSKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYS00.0A0A0K9NYS0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-40DNA-binding bromodomain-containing protein