PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00760.1
Common NameZOSMA_54G00760
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family E2F/DP
Protein Properties Length: 184aa    MW: 21106.9 Da    PI: 9.0336
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.87.6e-131383971
          E2F_TDP 39 vknkrRRiYDilNVLealnliek.....kekneirwkg 71
                     +++k+RR+YDi+NVL +lnliek     ++k+++rw g
  Zosma54g00760.1  1 MRTKVRRLYDIANVLASLNLIEKtqdvdSRKPAFRWLG 38
                     689*********************99999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023191.2E-10138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.16E-7239IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-12340IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRTKVRRLYD IANVLASLNL IEKTQDVDSR KPAFRWLGVS SKCHNVVESA EPLAVKPWNK  60
RSFGSDLTNA NAELKKTKMN PVADENPRKV MKRTDDIRQC NMTAQRQLQV SKTYSFGPFL  120
PLVGLKYEED TEADDKRDSS MNEWEDLASS FRLQYHNQAL RDLFAHYMEA WKSWYVEVAQ  180
GGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798029.12e-67E2F transcription factor-like E2FE
TrEMBLA0A0K9NYY01e-135A0A0K9NYY0_ZOSMR; Uncharacterized protein
STRINGXP_008798029.16e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.24e-38DP-E2F-like 1