PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00770.1
Common NameZOSMA_54G00770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family E2F/DP
Protein Properties Length: 191aa    MW: 21245.3 Da    PI: 7.4321
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.71.9e-232388171
          E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     rk+ksL+ll++kfl l++++  + v+l+e+a++L    v  +rRRiYDi+NV e+++++++k+kn+++w+g
  Zosma54g00770.1 23 RKQKSLGLLCTKFLGLYNREGVECVSLDEAASRL---GV--ERRRIYDIVNVVESVGVLSRKAKNRYSWIG 88
                     79*****************999************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-271989IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.33E-162287IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-272388IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-202488IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSMNEPPFFD ELGYIAHNHA YSRKQKSLGL LCTKFLGLYN REGVECVSLD EAASRLGVER  60
RRIYDIVNVV ESVGVLSRKA KNRYSWIGFK GIPKALASLK EEAKRETSNN SGNIAFSYGK  120
NLDDDDDDKL IDHDAETVDD TLTLSIKTTP SPNVPVKVRP GMYFIILLSL TIFTLKASLL  180
LCASSMKYEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-2022100385Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272100.14e-47PREDICTED: E2F transcription factor-like E2FE isoform X1
RefseqXP_010272101.14e-47PREDICTED: E2F transcription factor-like E2FE isoform X2
TrEMBLA0A0K9NWL41e-138A0A0K9NWL4_ZOSMR; Uncharacterized protein
STRINGXP_010272100.11e-46(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.18e-43DP-E2F-like 1