PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma56g01090.1
Common NameZOSMA_56G01090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 144aa    MW: 16115 Da    PI: 5.0091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma56g01090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-201867356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+G+r++  +g+W+AeIrdp+++    r++lg+++t+eeAa+a++ a+ +++g+
  Zosma56g01090.1 18 YRGIRRRA-WGKWAAEIRDPKKG---GRVWLGTYDTPEEAARAYDVAAIEIRGN 67
                     9****777.**********9654...7************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-321775IPR001471AP2/ERF domain
PfamPF008477.6E-141766IPR001471AP2/ERF domain
SMARTSM003802.1E-361780IPR001471AP2/ERF domain
PROSITE profilePS5103224.791774IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-231775IPR016177DNA-binding domain
PRINTSPR003677.1E-111829IPR001471AP2/ERF domain
CDDcd000182.87E-331876No hitNo description
PRINTSPR003677.1E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSNEEDKCRK TKKLKYVYRG IRRRAWGKWA AEIRDPKKGG RVWLGTYDTP EEAARAYDVA  60
AIEIRGNKAK LNFPNDISIS SGSSKPNLVS PTPPETSTAS TATMNTATPG IFLPWDDDEE  120
YFPIIADSEM SIWDDTFTTL FND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2418821580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956635.15e-34ethylene-responsive transcription factor RAP2-3
SwissprotO222596e-30ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0K9NW551e-100A0A0K9NW55_ZOSMR; Uncharacterized protein
STRINGXP_008789907.11e-31(Phoenix dactylifera)
STRINGSb07g022180.13e-30(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-31ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]