PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma56g01400.1

Common Name

ZOSMA_56G01400

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 231aa MW: 25119.5 Da PI: 8.5895

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma56g01400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	1.9e-40	50	149	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca +C+++pyf ++p+kfa vhk++Gasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael Zosma56g01400.1 50 PCAACKLLRRRCALECPFSPYFSPHDPQKFASVHKVYGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQVLEAEL 143 7********************************************************************************************* PP DUF260 95 allkee 100 + l++e Zosma56g01400.1 144 NILRAE 149 *99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.897	49	150	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-40	50	147	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MFTGRERGGD DELAKRIKRE EDAPDRMRRS TTTTTQHLVG CQGSLNTLTP CAACKLLRRR 60 CALECPFSPY FSPHDPQKFA SVHKVYGASN VSKMLMEVPE SQRADAANSL VYEANVRLRD 120 PVYGCMGAIS ALQQQVQVLE AELNILRAEI TKHRFRPTNG GNNVIATTSH VHVGGVSVAA 180 LPPIHTRITP PEQASSSSSI YTPPPPSNST TTIPYSSITN DNVINVLYLG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-41	49	153	10	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-41	49	153	10	114	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925198.1	4e-85	LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-65	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A0K9NW86	1e-170	A0A0K9NW86_ZOSMR; Putative LOB domain-containing protein
STRING	cassava4.1_031813m	6e-83	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-65	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Zosma56g01400.1

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]